| Penalties | Club | VS Club | Date | |
|---|---|---|---|---|
| 9 | Lions | Cheetahs | 25-02-2012 | Match details |
| 8 | Crusaders | Western Stormers | 14-04-2012 | Match details |
| 7 | Cheetahs | Chiefs | 14-04-2012 | Match details |
| 7 | Sharks | Highlanders | 05-05-2012 | Match details |
| 7 | Bulls | Brumbies | 21-04-2012 | Match details |
| 7 | Queensland Reds | Western Force | 03-03-2012 | Match details |
| 6 | Blues | Hurricanes | 23-03-2012 | Match details |
| 6 | Highlanders | Blues | 20-04-2012 | Match details |
| 5 | Chiefs | Brumbies | 16-03-2012 | Match details |
| 5 | Brumbies | Melbourne Rebels | 01-06-2012 | Match details |
| 5 | Hurricanes | Lions | 02-03-2012 | Match details |
| 5 | Western Stormers | Blues | 16-03-2012 | Match details |
| 5 | Melbourne Rebels | Blues | 05-04-2012 | Match details |
| 4 | New South Wales | Highlanders | 10-03-2012 | Match details |
| 4 | Western Force | Brumbies | 24-02-2012 | Match details |
